DIMA 3.0 : Domain interaction map

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dc.contributor.authorLuo, Qibin
dc.contributor.authorPagel, Philipp
dc.contributor.authorVilne, Baiba
dc.contributor.authorFrishman, Dmitrij
dc.date.accessioned2021-08-13T11:05:01Z
dc.date.available2021-08-13T11:05:01Z
dc.date.issued2011-01
dc.descriptionFunding Information: Q.L. is supported by a scholarship of the German Academic Exchange Service (DAAD). Funding for open access charge: Helmholtz Gesellschaft. Copyright: Copyright 2011 Elsevier B.V., All rights reserved.
dc.description.abstractDomain Interaction MAp (DIMA, available at http:// webclu.bio.wzw.tum.de/ dima) is a database of predicted and known interactions between protein domains. It integrates 5807 structurally known interactions imported from the iPfam and 3did databases and 46 900 domain interactions predicted by four computational methods: domain phylogenetic profiling, domain pair exclusion algorithm correlated mutations and domain interaction prediction in a discriminative way. Additionally predictions are filtered to exclude those domain pairs that are reported as non-interacting by the Negatome database. The DIMA Web site allows to calculate domain interaction networks either for a domain of interest or for entire organisms, and to explore them interactively using the Flash-based Cytoscape Web software.en
dc.description.statusPeer reviewed
dc.format.extent6
dc.format.extent1249655
dc.identifier.citationLuo, Q, Pagel, P, Vilne, B & Frishman, D 2011, 'DIMA 3.0 : Domain interaction map', Nucleic Acids Research, vol. 39, no. SUPPL. 1, pp. D724-D729. https://doi.org/10.1093/nar/gkq1200
dc.identifier.doi10.1093/nar/gkq1200
dc.identifier.issn0305-1048
dc.identifier.urihttps://dspace.rsu.lv/jspui/handle/123456789/6005
dc.identifier.urlhttp://www.scopus.com/inward/record.url?scp=78651334820&partnerID=8YFLogxK
dc.language.isoeng
dc.relation.ispartofNucleic Acids Research
dc.rightsinfo:eu-repo/semantics/openAccess
dc.subject1.6 Biological sciences
dc.subject2.2 Electrical engineering, Electronic engineering, Information engineering
dc.subject1.1. Scientific article indexed in Web of Science and/or Scopus database
dc.subjectGenetics
dc.titleDIMA 3.0 : Domain interaction mapen
dc.type/dk/atira/pure/researchoutput/researchoutputtypes/contributiontojournal/article

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